Hi erics11,
It depends on what you want to do :
Do you want to keep it in the pot ?
Or more general, do you want to keep that tree small, or not ?
If you want to keep the tree under control, cut it at 2 or 3 feet over the dirt.
When to do it ? I wouldn't do it now. I would do it in March or April next year.
For now, keep the pot moist in a shadowy spot for two weeks and then the tree should be fine and you would apply the same cares as for a normal tree .
By the way, are you sure that this tree is of a good strain ?