I hope I can clarify a couple of points here. As I mentioned above, according to the literature labs grow seedlings in glasshouses (the term used for greenhouse) or pots under a screen system to get FMV free trees. There are many scientific papers starting with one published with Condit in 1933 demonstrating that FMD/FMV is NOT seed transmissible. Any of you interested in learning more about seed transmission of plant viruses may find this review helpful.
http://www.dias.kvl.dk/EJCVetc/Johansenetal1994.pdf
Gina, thank you for the Wikipedia link! I read a recent paper that I neglected to grab as a pdf and now can not find saying current thinking is ~30% of plant viruses can be seed transmitted. The upward revision comes with the finding that some viruses seed transmit inefficiently causing some to be missed initially. In the case of fig viruses, FLV-1 is the only one to date demonstrated to be seed transmitted. FLV-1 is reported to cause a mild mottling condition at worst and is apparently not the cause of significant FMD by itself. Many trees are infected by multiple viruses. The degree to which FLV-1 might interact with other viruses and cause significant FMD is unknown.
http://www.sipav.org/main/jpp/index.php/jpp/article/viewFile/546/334
Herman, as usual, I think cuts right to the core of the problem and supplies us a big dose of common sense. It seems to me he has constructed a pretty effective solution for himself by vigorously working to only retain the healthiest trees in his collection. Although, I have a fair bit of experience with citrus, apricots & plums, I have only been playing with figs for 18 months. So, I pay close attention to Herman's experience(s) as he posts. My reading of the literature is that the scientists actively studying FMD believe that FMV is the usual cause of significant FMD as opposed to mild mottling. The degree to which the different variants of FMV cause greater or lessor disease is unknown. The degree to which the other fig mottling viruses I list in my post above cause significant FMD alone or in conjunction with any of the other viruses is unknown. The degree to which HOW you grow your fig trees might affect whether they show FMD is unknown although anecdotes like luke's above surely suggest there is something there. I think it is clear that it is a complex problem & there is a lot yet to be discovered. So, there is a lot to be said for Herman's common sense, practical approach.
Relative to whether these fig viruses are intracellular (inside the cell) or intercellular (outside the cell), the statement that bacteria and viruses need not be intracellular is correct. However, for a virus to replicate and cause pathology, it must be intracellular. Bacteria and fungi do not normally need host cell machinery to reproduce and can exist either intracellularly or intercellularly and cause disease either way depending on the particular microorganism.
There is one intriguing possibility that might supply a possible treatment for FMD. Aspirin. Salicylic acid (aspirin) is produced by plants in response to infection by pathogens and activates the plant's innate immune system. It has been demonstrated that treatment with salicylic acid can prevent or limit several plant infectious diseases.
http://segenetica.es/cng2/cng2008/biblio/Ref-Marc-Valls---Jones-and-Dangl-Nat06.pdf
http://igitur-archive.library.uu.nl/bio/2009-0512-200821/NatChemBiol-Pieterse-2009.pdf
This is my first year propagating from cuttings. All but one of my cuttings are from Encanto (thanks Jon!!!). Two of my 3 Sicilian Black Italian cuttings are doing well and showing little, if any, sign of FMD. However, one started showing significant FMD several weeks ago. It had been doing well but slowed up as the FMD appeared. I do a foliar spray of worm casting tea that contains salicylic acid on my tomatoes roughly every week. So, I decided to spray the fig too. After 2 sprayings, the leaves have greened considerably and the mottling is clearly decreased. How much of that is due to the aspirin or nutrition from the worm casting tea or both I can not say. My plan is to try to test for any aspirin effect more carefully next year on what I think many (most?) would agree is a true FMD challenge: cuttings from UC Davis. I will propagate some with and some without routine salicylic acid treatment and see if there is an impact on FMD appearance. I am assuming that they provide several cuttings of each cultivar as Jon did. If not, I'll have to try something else.
Good luck with your trees!