The answer is probably, maybe, maybe not, hard to say. Almost everything affects the taste of figs, weather, soil, fertilizer, breed of neighbor's dog, etc. However, since I doubt that you actually chew many of the seeds, they likely don't have much affect. Also, however, in addition, by the way, there is this other factor: it will have seeds without caprification (pollination), but if it is caprified, will likely have a different flavor (and viable seeds). You can get a idea from comparing pix of fruit at various locations around the country versus pix of figs at UC Davis (which are presumed to have been caprified) - you will notice quite different colors in many cases.