If a plant has the genetic predisposition for a certain pigmention, it will often be expressed in more than one location - fruits, stems, leaf tips, bracts... And the pigmentation will often be influenced by the environment, including soil. Full sun will often bring out pigment in a plant. Depending on the plant, sometimes shade will do it too. It can be a variable trait.
I started cuttings from an unknown fig. It has reddish stems and bracts, and even darker leaves. The one thing I know about this fig's fruits without having seen a ripe one is that they will be dark. :)
I love dark red snapdragons. When I am shopping for plant starts in pony packs, to get the dark red flowers, I make sure some of the plants in a mixed pack have reddish leaves and stems. If you want light colored snap flowers (white or yellow or pale pink) look for pale green (but healthy) stems and leaves. Same principle.