i found out different cup even in same size might need different number of holes. my previous 16 oz cups were fine with 3 holes on the bottom, using peat pot method. then i changed to thicker 160z cups with different rim shape. this ones seems to retain more moisture and i saw a mold between the cup and the peat pot. now i put on 4 on the bottom. however, i'm thinking it might also need few holes on the side.
i use 1/4" drill bit for the bottom. i'll probably go with something much smaller for the side. the balance should be where the soil will retain enought moisture, but not so much that it will rot the root.