First, let's consider soil moisture in containers. There are 5 levels -- count'em on one hand!
1. Saturated -- typically during watering before soil drains
2. Wet -- in a loamy soil, this is the state immediately after you have watered AND the excess moisture has drained. Ok, more drops will come but essentially its done draining.
3. Moist -- There is moisture in the soil but also microscopic air pockets between soil particles due to evaporation, uptake by the plant(s), and subsequent drainage. It is the favorite state of most plants. Sand and clay are only briefly in this state.
4. Less Than Moist -- The soil isn't dry but it is going there quickly. It is time to water. Water thoroughly so that the soil is saturated and make sure the container can drain.
5. Dry -- Many plants are dead or dying at this state.
Second, when you check soil moisture the place to measure is in the holes at the bottom of the container. A chopstick makes a great probe.
Now if all of the above has been ok but your rootings are still rotting, then the next culprit would be anaerobic bacteria. This is often due to copper and/or zinc missing from the culture. If you suspect this is the problem, then over the counter you can purchase Liqui-Cop manufactured under the Monterey Gardens brand, or with (or without in some states) a pesticide applicators license you can purchase Kocide 3000. The latter is potent, a few pounds might last you a lifetime.
Also I would caution about using mycorrhizae in a growing media rich in organics with no sources of phosphate, iron, copper, and zinc to mediate the mycorrhizae growth. This is probably not what you are experiencing but I have seen it in the past.